Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_04150 | Not Available | Negative | 1083036 - 1083626 | 22811.2 |
| type iv secretion protein rhs | DWZ36_04155 | Not Available | Negative | 1083623 - 1088011 | 163041.0 |
| smi1/knr4 family protein | DWZ36_04160 | Not Available | Negative | 1088035 - 1089021 | 38012.1 |
| type iv secretion protein rhs | DWZ36_04165 | Not Available | Negative | 1089028 - 1089900 | 33321.2 |
| hypothetical protein | DWZ36_04170 | Not Available | Negative | 1089926 - 1090213 | 11068.7 |
| hypothetical protein | DWZ36_04175 | Not Available | Negative | 1090179 - 1091522 | 51243.6 |
| type iv secretion protein rhs | DWZ36_04180 | Not Available | Negative | 1091562 - 1093325 | 63137.1 |
| type vi secretion system needle protein hcp | DWZ36_04185 | Not Available | Negative | 1093436 - 1093831 | 14749.5 |
| hypothetical protein | DWZ36_04190 | Not Available | Negative | 1094346 - 1095149 | 30951.4 |
| hypothetical protein | DWZ36_04195 | Not Available | Negative | 1095155 - 1097503 | 89814.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

