Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ai-2e family transporter | DWZ36_04100 | Not Available | Negative | 1068959 - 1070095 | 42742.1 |
| thymidine kinase | DWZ36_04105 | Not Available | Negative | 1070106 - 1070705 | 22372.9 |
| 16s rrna (cytidine(1402)-2'-o)-methyltransferase | DWZ36_04110 | Not Available | Positive | 1070910 - 1071584 | 24887.2 |
| hypothetical protein | DWZ36_04115 | Not Available | Positive | 1071613 - 1072461 | 31533.4 |
| noncanonical pyrimidine nucleotidase, yjjg family | DWZ36_04120 | Not Available | Positive | 1072537 - 1073226 | 26926.8 |
| dna methylase | DWZ36_04125 | Not Available | Positive | 1073411 - 1078390 | 189258.0 |
| ntpase | DWZ36_04130 | Not Available | Negative | 1078632 - 1080521 | 73025.8 |
| hypothetical protein | DWZ36_04135 | Not Available | Negative | 1080532 - 1080765 | 8787.96 |
| hypothetical protein | DWZ36_04140 | Not Available | Negative | 1080744 - 1081133 | 14781.8 |
| frg domain-containing protein | DWZ36_04145 | Not Available | Negative | 1081466 - 1082956 | 57595.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

