Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF31-3
Accession NumberQRQI00000000.1
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s13 | DWZ36_00335 | Not Available | + | 51287 - 51667 | 14121.3 |
| 30s ribosomal protein s11 | DWZ36_00340 | Not Available | + | 51679 - 52068 | 13878.8 |
| 30s ribosomal protein s4 | DWZ36_00345 | Not Available | + | 52185 - 52790 | 22540.2 |
| dna-directed rna polymerase subunit alpha | DWZ36_00350 | Not Available | + | 52802 - 53794 | 37525.1 |
| 50s ribosomal protein l17 | DWZ36_00355 | Not Available | + | 53798 - 54286 | 17965.6 |
| hypothetical protein | DWZ36_00360 | Not Available | + | 54697 - 55122 | 15788.1 |
| hypothetical protein | DWZ36_00365 | Not Available | + | 55241 - 55780 | 19772.7 |
| hypothetical protein | DWZ36_00370 | Not Available | - | 55875 - 57674 | 68617.8 |
| hypothetical protein | DWZ36_00375 | Not Available | + | 58004 - 58675 | 23981.6 |
| duf4252 domain-containing protein | DWZ36_00380 | Not Available | - | 58930 - 59388 | 17333.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
