Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rod shape-determining protein mred | DWZ36_04050 | Not Available | Positive | 1058081 - 1058581 | 18956.0 |
| penicillin-binding protein 2 | DWZ36_04055 | Not Available | Positive | 1058581 - 1060431 | 69177.4 |
| rod shape-determining protein roda | DWZ36_04060 | Not Available | Positive | 1060412 - 1061866 | 54254.6 |
| gliding motility lipoprotein gldh | DWZ36_04065 | Not Available | Negative | 1061870 - 1062367 | 18762.5 |
| hypothetical protein | DWZ36_04070 | Not Available | Negative | 1062330 - 1063844 | 57743.0 |
| dna polymerase iii subunit delta | DWZ36_04075 | Not Available | Negative | 1063934 - 1065058 | 43533.9 |
| methylenetetrahydrofolate reductase | DWZ36_04080 | Not Available | Negative | 1065086 - 1066039 | 36181.4 |
| cardiolipin synthase | DWZ36_04085 | Not Available | Negative | 1066395 - 1067690 | 49710.2 |
| hypothetical protein | DWZ36_04090 | Not Available | Positive | 1068058 - 1068153 | 3271.89 |
| Trna-lys | Not Available | Not Available | Positive | 1068792 - 1068867 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

