Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_04000 | Not Available | Positive | 1039681 - 1040841 | 43407.2 |
| pectin esterase | DWZ36_04005 | Not Available | Positive | 1040848 - 1042575 | 64186.7 |
| hybrid sensor histidine kinase/response regulator | DWZ36_04010 | Not Available | Positive | 1042770 - 1047170 | 169168.0 |
| hypothetical protein | DWZ36_04015 | Not Available | Positive | 1047366 - 1048100 | 27025.3 |
| s9 family peptidase | DWZ36_04020 | Not Available | Positive | 1048210 - 1050651 | 94234.0 |
| aminoglycoside phosphotransferase | DWZ36_04025 | Not Available | Negative | 1050737 - 1051819 | 41565.0 |
| inorganic phosphate transporter | DWZ36_04030 | Not Available | Negative | 1051927 - 1054179 | 83841.5 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase purh | DWZ36_04035 | Not Available | Positive | 1054460 - 1055983 | 56236.2 |
| rod shape-determining protein | DWZ36_04040 | Not Available | Positive | 1056096 - 1057118 | 36937.0 |
| rod shape-determining protein mrec | DWZ36_04045 | Not Available | Positive | 1057224 - 1058072 | 31395.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

