Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWZ36_03950 | Not Available | Positive | 1018237 - 1021284 | 112611.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_03955 | Not Available | Positive | 1021291 - 1023255 | 73508.7 |
| xylan 1,4-beta-xylosidase | DWZ36_03960 | Not Available | Positive | 1023564 - 1025063 | 56463.8 |
| duf5060 domain-containing protein | DWZ36_03965 | Not Available | Positive | 1025101 - 1026708 | 61914.5 |
| hypothetical protein | DWZ36_03970 | Not Available | Positive | 1026902 - 1029448 | 95064.9 |
| glycoside hydrolase family 2 | DWZ36_03975 | Not Available | Positive | 1029489 - 1032857 | 126750.0 |
| duf4968 domain-containing protein | DWZ36_03980 | Not Available | Positive | 1032871 - 1035255 | 91710.6 |
| hypothetical protein | DWZ36_03985 | Not Available | Positive | 1035273 - 1037273 | 74819.1 |
| cupin domain-containing protein | DWZ36_03990 | Not Available | Negative | 1037367 - 1037858 | 18182.0 |
| pectate lyase | DWZ36_03995 | Not Available | Positive | 1038047 - 1039660 | 61360.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

