Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4974 domain-containing protein | DWZ36_03845 | Not Available | Positive | 977569 - 978513 | 35899.3 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_03850 | Not Available | Positive | 978669 - 982217 | 133464.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_03855 | Not Available | Positive | 982229 - 984169 | 74861.8 |
| glycoside hydrolase family 88 protein | DWZ36_03860 | Not Available | Positive | 984263 - 985384 | 43052.3 |
| duf2264 domain-containing protein | DWZ36_03865 | Not Available | Positive | 985398 - 986660 | 48386.9 |
| duf4982 domain-containing protein | DWZ36_03870 | Not Available | Positive | 986672 - 989242 | 98048.9 |
| helix-turn-helix domain-containing protein | DWZ36_03880 | Not Available | Positive | 991917 - 994703 | 106132.0 |
| aldehyde dehydrogenase | DWZ36_03885 | Not Available | Positive | 994919 - 996355 | 52527.2 |
| arabinosidase | DWZ36_03890 | Not Available | Positive | 996541 - 997545 | 38218.6 |
| duf4038 domain-containing protein | DWZ36_03895 | Not Available | Positive | 997615 - 999078 | 55585.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

