Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 28 protein | DWZ36_03790 | Not Available | Negative | 962262 - 964046 | 66068.3 |
| hypothetical protein | DWZ36_03795 | Not Available | Positive | 964259 - 964954 | 26850.2 |
| duf229 domain-containing protein | DWZ36_03800 | Not Available | Negative | 965158 - 966555 | 53434.7 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_03805 | Not Available | Negative | 966596 - 968398 | 69755.8 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_03810 | Not Available | Negative | 968413 - 971799 | 126580.0 |
| fecr family protein | DWZ36_03815 | Not Available | Negative | 972053 - 973066 | 38548.0 |
| rna polymerase sigma-70 factor | DWZ36_03820 | Not Available | Positive | 973210 - 973776 | 22233.8 |
| dna-binding protein | DWZ36_03825 | Not Available | Negative | 973969 - 974649 | 25970.1 |
| helicase | DWZ36_03830 | Not Available | Positive | 974978 - 976375 | 53110.1 |
| rna polymerase sigma-70 factor | DWZ36_03840 | Not Available | Positive | 976863 - 977450 | 22880.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

