Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh-quinone oxidoreductase subunit a | DWZ36_03740 | Not Available | Negative | 947787 - 948137 | 13099.5 |
| hypothetical protein | DWZ36_03745 | Not Available | Negative | 948241 - 948618 | 14644.8 |
| trkh family potassium uptake protein | DWZ36_03750 | Not Available | Negative | 948721 - 950175 | 53478.3 |
| trk system potassium transporter trka | DWZ36_03755 | Not Available | Negative | 950175 - 951515 | 49307.5 |
| 1-deoxy-d-xylulose-5-phosphate synthase | DWZ36_03760 | Not Available | Negative | 951528 - 953426 | 70238.9 |
| gscfa domain protein | DWZ36_03765 | Not Available | Positive | 953519 - 954505 | 38641.5 |
| bifunctional udp-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase/alanine racemase | DWZ36_03770 | Not Available | Positive | 954481 - 956946 | 92727.9 |
| duf4858 domain-containing protein | DWZ36_03775 | Not Available | Positive | 957036 - 957599 | 21541.2 |
| exopolygalacturonase | DWZ36_03780 | Not Available | Negative | 957751 - 959055 | 49160.9 |
| beta-galactosidase | DWZ36_03785 | Not Available | Negative | 959097 - 961985 | 108873.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

