Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycogen synthase | DWZ36_03625 | Not Available | Negative | 917491 - 918315 | 31933.0 |
| pantoate--beta-alanine ligase | DWZ36_03630 | Not Available | Positive | 918667 - 919515 | 31339.6 |
| aspartate 1-decarboxylase | DWZ36_03635 | Not Available | Positive | 919537 - 919887 | 12822.7 |
| dde transposase | DWZ36_03640 | Not Available | Negative | 920165 - 921523 | 52906.8 |
| is1182 family transposase | DWZ36_03645 | Not Available | Negative | 921632 - 921904 | 10705.2 |
| beta-xylosidase | DWZ36_03655 | Not Available | Negative | 922272 - 925139 | 108267.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_03660 | Not Available | Negative | 925156 - 926874 | 64244.0 |
| response regulator | DWZ36_03670 | Not Available | Positive | 930230 - 934702 | 171725.0 |
| glycoside hydrolase family 28 protein | DWZ36_03675 | Not Available | Negative | 934780 - 936186 | 52362.6 |
| atp-binding protein | DWZ36_03685 | Not Available | Positive | 936621 - 936863 | 8923.97 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

