Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF31-3
Accession NumberQRQI00000000.1
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s8 | DWZ36_00285 | Not Available | + | 46216 - 46611 | 14565.0 |
| 50s ribosomal protein l6 | DWZ36_00290 | Not Available | + | 46626 - 47195 | 20910.5 |
| 50s ribosomal protein l18 | DWZ36_00295 | Not Available | + | 47217 - 47558 | 12645.5 |
| 30s ribosomal protein s5 | DWZ36_00300 | Not Available | + | 47562 - 48080 | 17941.0 |
| 50s ribosomal protein l30 | DWZ36_00305 | Not Available | + | 48090 - 48266 | 6433.21 |
| 50s ribosomal protein l15 | DWZ36_00310 | Not Available | + | 48297 - 48743 | 15681.0 |
| preprotein translocase subunit secy | DWZ36_00315 | Not Available | + | 48748 - 50094 | 49282.7 |
| type i methionyl aminopeptidase | DWZ36_00320 | Not Available | + | 50105 - 50902 | 29142.0 |
| translation initiation factor if-1 | DWZ36_00325 | Not Available | + | 50904 - 51122 | 8235.14 |
| 50s ribosomal protein l36 | DWZ36_00330 | Not Available | + | 51137 - 51253 | 4586.82 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
