Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome ubiquinol oxidase subunit i | DWZ36_03470 | Not Available | Negative | 885152 - 886654 | 55113.9 |
| duf4492 domain-containing protein | DWZ36_03475 | Not Available | Negative | 886678 - 886896 | 8685.8 |
| tolc family protein | DWZ36_03480 | Not Available | Positive | 887050 - 888393 | 50214.3 |
| efflux rnd transporter periplasmic adaptor subunit | DWZ36_03485 | Not Available | Positive | 888418 - 889641 | 44092.9 |
| abc transporter atp-binding protein | DWZ36_03490 | Not Available | Positive | 889683 - 890426 | 27209.8 |
| abc transporter permease | DWZ36_03495 | Not Available | Positive | 890445 - 891665 | 44142.1 |
| histidine kinase | DWZ36_03500 | Not Available | Positive | 891859 - 892914 | 40206.2 |
| dna-binding response regulator | DWZ36_03505 | Not Available | Positive | 892911 - 893636 | 27866.9 |
| tryptophan-rich sensory protein | DWZ36_03510 | Not Available | Positive | 893921 - 894385 | 18133.8 |
| hemerythrin domain-containing protein | DWZ36_03515 | Not Available | Positive | 894511 - 895206 | 27000.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

