Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate-dependent phosphoribosylglycinamide formyltransferase | DWZ36_03310 | Not Available | Positive | 846346 - 847515 | 42895.6 |
| cytochrome c biogenesis protein | DWZ36_03315 | Not Available | Negative | 848057 - 850309 | 86331.5 |
| hypothetical protein | DWZ36_03320 | Not Available | Negative | 850429 - 852048 | 61449.7 |
| hypothetical protein | DWZ36_03325 | Not Available | Negative | 852069 - 852266 | 7117.54 |
| peptidase m75 | DWZ36_03330 | Not Available | Negative | 852285 - 853466 | 42831.0 |
| hypothetical protein | DWZ36_03335 | Not Available | Negative | 853500 - 854834 | 50218.9 |
| rhomboid family intramembrane serine protease | DWZ36_03340 | Not Available | Negative | 855475 - 856140 | 25282.1 |
| 4-alpha-glucanotransferase | DWZ36_03345 | Not Available | Positive | 856321 - 858261 | 74862.2 |
| glycosyltransferase family 1 protein | DWZ36_03350 | Not Available | Positive | 858276 - 859541 | 47628.2 |
| alpha-amylase | DWZ36_03355 | Not Available | Positive | 859560 - 860972 | 53822.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

