Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metallophosphoesterase | DWZ36_03260 | Not Available | Negative | 836205 - 837011 | 31228.2 |
| duf1573 domain-containing protein | DWZ36_03265 | Not Available | Negative | 837220 - 837633 | 14929.0 |
| diacylglycerol kinase family protein | DWZ36_03270 | Not Available | Negative | 837728 - 838081 | 12967.2 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | DWZ36_03275 | Not Available | Negative | 838103 - 840316 | 84511.3 |
| duf4301 family protein | DWZ36_03280 | Not Available | Positive | 840460 - 841977 | 56785.2 |
| n-glycanase | DWZ36_03285 | Not Available | Positive | 842097 - 843347 | 46696.9 |
| dna alkylation repair protein | DWZ36_03290 | Not Available | Negative | 843452 - 844168 | 28375.3 |
| gnat family n-acetyltransferase | DWZ36_03295 | Not Available | Negative | 844189 - 844686 | 19247.4 |
| padr family transcriptional regulator | DWZ36_03300 | Not Available | Positive | 844863 - 845189 | 12456.0 |
| pspc domain-containing protein | DWZ36_03305 | Not Available | Positive | 845202 - 846248 | 38254.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

