Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| energy-dependent translational throttle protein etta | DWZ36_03210 | Not Available | Positive | 819115 - 820803 | 63671.1 |
| tonb-dependent receptor | DWZ36_03215 | Not Available | Positive | 821173 - 824514 | 123052.0 |
| tonb-dependent receptor | DWZ36_03220 | Not Available | Positive | 824989 - 827586 | 95800.9 |
| duf5017 domain-containing protein | DWZ36_03225 | Not Available | Positive | 827608 - 829500 | 69713.6 |
| rpn family recombination-promoting nuclease/putative transposase | DWZ36_03230 | Not Available | Positive | 829898 - 830755 | 33170.7 |
| 30s ribosomal protein s16 | DWZ36_03235 | Not Available | Negative | 830830 - 831381 | 19788.4 |
| ferritin | DWZ36_03240 | Not Available | Positive | 831588 - 832070 | 17905.2 |
| alpha/beta hydrolase | DWZ36_03245 | Not Available | Negative | 832522 - 833367 | 30944.9 |
| oligopeptide transporter, opt family | DWZ36_03250 | Not Available | Negative | 833401 - 835392 | 69984.6 |
| hypothetical protein | DWZ36_03255 | Not Available | Negative | 835478 - 836239 | 30047.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

