Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor rpod/siga | DWZ36_03160 | Not Available | Positive | 808920 - 809780 | 32805.3 |
| hypothetical protein | DWZ36_03165 | Not Available | Positive | 810002 - 810397 | 15169.6 |
| clostripain | DWZ36_03170 | Not Available | Positive | 810408 - 811670 | 46827.5 |
| hypothetical protein | DWZ36_03175 | Not Available | Negative | 811654 - 812052 | 15058.6 |
| divalent metal cation transporter | DWZ36_03180 | Not Available | Positive | 812155 - 813408 | 45774.1 |
| potassium/proton antiporter | DWZ36_03185 | Not Available | Negative | 813485 - 814933 | 52867.7 |
| mate family efflux transporter | DWZ36_03190 | Not Available | Negative | 814930 - 816282 | 49414.7 |
| had family hydrolase | DWZ36_03195 | Not Available | Positive | 816372 - 817022 | 24626.3 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | DWZ36_03200 | Not Available | Positive | 817075 - 817896 | 29580.9 |
| mfs transporter | DWZ36_03205 | Not Available | Positive | 817911 - 819077 | 43903.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

