Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWZ36_03105 | Not Available | Positive | 787676 - 790009 | 87137.7 |
| hypothetical protein | DWZ36_03115 | Not Available | Negative | 792267 - 792476 | 8280.6 |
| six-hairpin glycosidase | DWZ36_03120 | Not Available | Positive | 792512 - 795823 | 126760.0 |
| hydrolase | DWZ36_03125 | Not Available | Positive | 795875 - 798631 | 104336.0 |
| glycoside hydrolase family 28 protein | DWZ36_03130 | Not Available | Positive | 798698 - 800029 | 49440.7 |
| hypothetical protein | DWZ36_03135 | Not Available | Positive | 800038 - 801378 | 49758.5 |
| hybrid sensor histidine kinase/response regulator | DWZ36_03140 | Not Available | Negative | 801841 - 804978 | 119632.0 |
| helix-turn-helix domain-containing protein | DWZ36_03145 | Not Available | Positive | 805316 - 806152 | 32613.4 |
| duf417 domain-containing protein | DWZ36_03150 | Not Available | Positive | 806245 - 806835 | 21267.4 |
| do family serine endopeptidase | DWZ36_03155 | Not Available | Positive | 807157 - 808680 | 53839.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

