Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor | DWZ36_02630 | Not Available | Positive | 688536 - 689144 | 23944.0 |
| fecr family protein | DWZ36_02635 | Not Available | Positive | 689203 - 690198 | 38504.3 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_02640 | Not Available | Positive | 690436 - 693738 | 121135.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_02645 | Not Available | Positive | 693751 - 695379 | 62488.4 |
| serine/threonine protein phosphatase | DWZ36_02650 | Not Available | Positive | 695483 - 696541 | 40404.4 |
| hypothetical protein | DWZ36_02655 | Not Available | Positive | 696548 - 697840 | 48677.0 |
| hypothetical protein | DWZ36_02660 | Not Available | Positive | 698174 - 698416 | 8616.62 |
| hypothetical protein | DWZ36_02665 | Not Available | Positive | 698456 - 698638 | 6803.6 |
| s24 family peptidase | DWZ36_02670 | Not Available | Negative | 698825 - 699508 | 25281.2 |
| dna-directed rna polymerase subunit beta | DWZ36_02675 | Not Available | Positive | 699642 - 699857 | 7960.58 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

