Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF31-3
Accession NumberQRQI00000000.1
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 5s ribosomal rna | Not Available | Not Available | + | 34200 - 34310 | Not Available |
| duf3467 domain-containing protein | DWZ36_00190 | Not Available | + | 35668 - 36009 | 12561.0 |
| 30s ribosomal protein s12 | DWZ36_00195 | Not Available | + | 36198 - 36611 | 14994.4 |
| 30s ribosomal protein s7 | DWZ36_00200 | Not Available | + | 36760 - 37236 | 18204.1 |
| elongation factor g | DWZ36_00205 | Not Available | + | 37268 - 39385 | 77460.5 |
| 30s ribosomal protein s10 | DWZ36_00210 | Not Available | + | 39471 - 39776 | 11419.0 |
| 50s ribosomal protein l3 | DWZ36_00215 | Not Available | + | 39798 - 40415 | 21900.8 |
| 50s ribosomal protein l4 | DWZ36_00220 | Not Available | + | 40415 - 41041 | 23045.8 |
| 50s ribosomal protein l23 | DWZ36_00225 | Not Available | + | 41063 - 41353 | 10804.2 |
| 50s ribosomal protein l2 | DWZ36_00230 | Not Available | + | 41359 - 42180 | 29634.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
