Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytidylate kinase-like family protein | DWZ36_02480 | Not Available | Negative | 651773 - 652402 | 23564.2 |
| mate family efflux transporter | DWZ36_02485 | Not Available | Negative | 652456 - 653826 | 49490.1 |
| serine protease | DWZ36_02490 | Not Available | Positive | 653948 - 655321 | 49946.9 |
| exodeoxyribonuclease vii large subunit | DWZ36_02495 | Not Available | Positive | 655321 - 656628 | 49535.8 |
| exodeoxyribonuclease vii small subunit | DWZ36_02500 | Not Available | Positive | 656637 - 656840 | 7823.46 |
| branched-chain amino acid aminotransferase | DWZ36_02505 | Not Available | Positive | 657021 - 658040 | 37876.2 |
| duf975 family protein | DWZ36_02510 | Not Available | Positive | 658058 - 658684 | 23245.0 |
| trna (guanosine(46)-n7)-methyltransferase trmb | DWZ36_02515 | Not Available | Positive | 658807 - 659565 | 29773.6 |
| mrp family atp-binding protein | DWZ36_02520 | Not Available | Positive | 659576 - 660676 | 39559.0 |
| tonb family protein | DWZ36_02525 | Not Available | Negative | 660744 - 662594 | 69544.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

