Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DWZ36_02320 | Not Available | Positive | 608855 - 612271 | 126442.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_02325 | Not Available | Positive | 612292 - 613827 | 58932.3 |
| glycoside hydrolase | DWZ36_02330 | Not Available | Positive | 613859 - 615928 | 77970.3 |
| duf4981 domain-containing protein | DWZ36_02335 | Not Available | Positive | 615984 - 619214 | 122517.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_02340 | Not Available | Negative | 619401 - 621218 | 68245.8 |
| tonb-dependent receptor | DWZ36_02345 | Not Available | Negative | 621231 - 624323 | 115118.0 |
| dtdp-glucose 4,6-dehydratase | DWZ36_02350 | Not Available | Negative | 624797 - 625936 | 43722.0 |
| metallophosphoesterase | DWZ36_02355 | Not Available | Negative | 625985 - 626482 | 18707.5 |
| rna degradosome polyphosphate kinase | DWZ36_02360 | Not Available | Positive | 626540 - 628594 | 80560.6 |
| hypothetical protein | DWZ36_02365 | Not Available | Negative | 628620 - 628841 | 8538.35 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

