Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-leu | Not Available | Not Available | Positive | 591172 - 591259 | Not Available |
| tonb-dependent receptor | DWZ36_02270 | Not Available | Positive | 592321 - 594645 | 88534.2 |
| duf1232 domain-containing protein | DWZ36_02275 | Not Available | Positive | 594790 - 595152 | 13988.2 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_02285 | Not Available | Positive | 597384 - 598874 | 55858.7 |
| methylmalonyl-coa mutase | DWZ36_02290 | Not Available | Negative | 599197 - 601347 | 79111.7 |
| methylmalonyl-coa mutase small subunit | DWZ36_02295 | Not Available | Negative | 601357 - 603267 | 70522.5 |
| putative transporter | DWZ36_02300 | Not Available | Positive | 603553 - 605223 | 60171.9 |
| abc transporter atp-binding protein | DWZ36_02305 | Not Available | Positive | 605339 - 606973 | 61991.8 |
| rna polymerase sigma-70 factor | DWZ36_02310 | Not Available | Positive | 607013 - 607594 | 22722.7 |
| duf4974 domain-containing protein | DWZ36_02315 | Not Available | Positive | 607724 - 608710 | 38650.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

