Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate kinase | DWZ36_02160 | Not Available | Positive | 572226 - 573689 | 54241.6 |
| methyltransferase | DWZ36_02165 | Not Available | Positive | 573705 - 574343 | 24383.5 |
| 30s ribosome-binding factor rbfa | DWZ36_02170 | Not Available | Positive | 574417 - 574752 | 12972.9 |
| abc transporter permease | DWZ36_02175 | Not Available | Positive | 574762 - 576000 | 45708.0 |
| pyridoxamine kinase | DWZ36_02180 | Not Available | Negative | 576387 - 577259 | 32665.3 |
| glutamate racemase | DWZ36_02185 | Not Available | Negative | 577316 - 578161 | 31392.0 |
| omph family outer membrane protein | DWZ36_02190 | Not Available | Negative | 578264 - 578767 | 19260.2 |
| omph family outer membrane protein | DWZ36_02195 | Not Available | Negative | 578825 - 579340 | 18967.6 |
| outer membrane protein assembly factor bama | DWZ36_02200 | Not Available | Negative | 579361 - 582003 | 100717.0 |
| isoprenyl transferase | DWZ36_02205 | Not Available | Negative | 582015 - 582746 | 28066.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

