Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| relaxase | DWZ36_22020 | Not Available | Positive | 5096987 - 5097126 | 5144.29 |
| hypothetical protein | DWZ36_22030 | Not Available | Negative | 5098234 - 5098575 | 13557.6 |
| dna primase | DWZ36_22035 | Not Available | Positive | 5098688 - 5099509 | 31072.0 |
| mobilization protein | DWZ36_22040 | Not Available | Positive | 5099792 - 5100240 | 17169.6 |
| is1380-like element is613 family transposase | DWZ36_22045 | Not Available | Positive | 5100378 - 5101431 | 40512.0 |
| hypothetical protein | DWZ36_22055 | Not Available | Positive | 5102619 - 5103047 | 16648.0 |
| is982 family transposase | DWZ36_22060 | Not Available | Negative | 5103327 - 5104198 | 33796.7 |
| mobilization protein | DWZ36_22065 | Not Available | Positive | 5104226 - 5105001 | 30297.6 |
| site-specific integrase | DWZ36_22070 | Not Available | Positive | 5105390 - 5105892 | 19391.7 |
| acetyl-coa carboxylase biotin carboxylase subunit | DWZ36_22080 | Not Available | Positive | 5106670 - 5107368 | 27017.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

