Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| marr family transcriptional regulator | DWZ36_02110 | Not Available | Negative | 563430 - 564236 | 31002.4 |
| hypothetical protein | DWZ36_02115 | Not Available | Negative | 564286 - 564471 | 7365.7 |
| hypothetical protein | DWZ36_02120 | Not Available | Negative | 564778 - 564960 | 7236.87 |
| hypothetical protein | DWZ36_02125 | Not Available | Positive | 565716 - 566015 | 11560.8 |
| hypothetical protein | DWZ36_02130 | Not Available | Positive | 566063 - 566653 | 23145.7 |
| atp-binding protein | DWZ36_02135 | Not Available | Negative | 566751 - 567719 | 34981.2 |
| duf4369 domain-containing protein | DWZ36_02140 | Not Available | Negative | 567724 - 568791 | 40460.1 |
| tetratricopeptide repeat protein | DWZ36_02145 | Not Available | Negative | 568945 - 570621 | 60893.8 |
| site-specific tyrosine recombinase xerd | DWZ36_02150 | Not Available | Negative | 570763 - 571704 | 36180.1 |
| type ii 3-dehydroquinate dehydratase | DWZ36_02155 | Not Available | Positive | 571771 - 572193 | 15686.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

