Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_21620 | Not Available | Positive | 5037012 - 5037728 | 26457.8 |
| hypothetical protein | DWZ36_21625 | Not Available | Positive | 5037865 - 5038062 | 7219.92 |
| upxy family transcription antiterminator | DWZ36_21630 | Not Available | Negative | 5038537 - 5039055 | 20289.0 |
| hypothetical protein | DWZ36_21635 | Not Available | Negative | 5039146 - 5039328 | 6889.1 |
| site-specific integrase | DWZ36_21640 | Not Available | Negative | 5039631 - 5040845 | 46384.4 |
| hypothetical protein | DWZ36_21645 | Not Available | Negative | 5041006 - 5041761 | 28304.7 |
| mobilization protein | DWZ36_21650 | Not Available | Negative | 5041793 - 5042638 | 32178.3 |
| hypothetical protein | DWZ36_21660 | Not Available | Positive | 5043226 - 5044479 | 47972.1 |
| hypothetical protein | DWZ36_21665 | Not Available | Positive | 5044421 - 5045425 | 39120.6 |
| integrase | DWZ36_21670 | Not Available | Positive | 5045431 - 5046447 | 39211.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

