Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_21400 | Not Available | Negative | 4999858 - 5000070 | 7909.68 |
| gnat family n-acetyltransferase | DWZ36_21405 | Not Available | Positive | 5000080 - 5000679 | 23413.9 |
| is4 family transposase | DWZ36_21410 | Not Available | Positive | 5000784 - 5002268 | 57099.6 |
| hypothetical protein | DWZ36_21415 | Not Available | Negative | 5002313 - 5002600 | 10744.9 |
| sigma-70 family rna polymerase sigma factor | DWZ36_21430 | Not Available | Positive | 5003380 - 5003756 | 15062.8 |
| tonb-dependent receptor | DWZ36_21435 | Not Available | Positive | 5004204 - 5007308 | 113836.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_21440 | Not Available | Positive | 5007323 - 5009188 | 70698.2 |
| hypothetical protein | DWZ36_21445 | Not Available | Positive | 5009423 - 5009722 | 11716.9 |
| hypothetical protein | DWZ36_21450 | Not Available | Positive | 5009697 - 5010278 | 22509.9 |
| invertase | DWZ36_21455 | Not Available | Negative | 5011119 - 5011730 | 23063.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

