Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gfo/idh/moca family oxidoreductase | DWZ36_21040 | Not Available | Negative | 4934813 - 4936216 | 53371.0 |
| hypothetical protein | DWZ36_21045 | Not Available | Negative | 4936327 - 4936803 | 17348.6 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_21050 | Not Available | Negative | 4936822 - 4938765 | 72714.1 |
| tonb-dependent receptor | DWZ36_21055 | Not Available | Negative | 4938774 - 4941896 | 115566.0 |
| hypothetical protein | DWZ36_21065 | Not Available | Negative | 4942522 - 4942716 | 7558.34 |
| sigma-70 family rna polymerase sigma factor | DWZ36_21075 | Not Available | Negative | 4943301 - 4943396 | 3604.37 |
| polysaccharide pyruvyl transferase family protein | DWZ36_21080 | Not Available | Negative | 4943471 - 4944631 | 44109.4 |
| nad-dependent epimerase/dehydratase family protein | DWZ36_21085 | Not Available | Negative | 4944628 - 4945752 | 43435.6 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | DWZ36_21090 | Not Available | Negative | 4945756 - 4947522 | 66487.5 |
| holin | DWZ36_21095 | Not Available | Negative | 4947543 - 4949081 | 57366.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

