Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-isopropylmalate synthase | DWZ36_20990 | Not Available | Positive | 4924823 - 4926319 | 54450.0 |
| 3-isopropylmalate dehydratase large subunit | DWZ36_20995 | Not Available | Positive | 4926337 - 4927719 | 50049.1 |
| 3-isopropylmalate dehydratase small subunit | DWZ36_21000 | Not Available | Positive | 4927733 - 4928329 | 22407.5 |
| 2-isopropylmalate synthase | DWZ36_21005 | Not Available | Positive | 4928335 - 4929855 | 56824.1 |
| 3-isopropylmalate dehydrogenase | DWZ36_21010 | Not Available | Positive | 4929949 - 4931010 | 39089.9 |
| ahpc/tsa family protein | DWZ36_21015 | Not Available | Positive | 4931142 - 4932287 | 42905.5 |
| peptide-methionine (s)-s-oxide reductase | DWZ36_21020 | Not Available | Negative | 4932356 - 4932841 | 18625.0 |
| tetratricopeptide repeat protein | DWZ36_21025 | Not Available | Positive | 4932959 - 4933813 | 32582.4 |
| dna-binding protein | DWZ36_21030 | Not Available | Positive | 4933908 - 4933985 | 2937.61 |
| dna-binding protein | DWZ36_21035 | Not Available | Positive | 4934028 - 4934351 | 12557.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

