Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l9 | DWZ36_20885 | Not Available | Negative | 4904700 - 4905143 | 16159.9 |
| 30s ribosomal protein s18 | DWZ36_20890 | Not Available | Negative | 4905159 - 4905428 | 10561.2 |
| 30s ribosomal protein s6 | DWZ36_20895 | Not Available | Negative | 4905431 - 4905775 | 13428.3 |
| marr family transcriptional regulator | DWZ36_20900 | Not Available | Positive | 4905985 - 4906431 | 17228.0 |
| hypothetical protein | DWZ36_20905 | Not Available | Positive | 4906540 - 4906722 | 6168.02 |
| dna-binding response regulator | DWZ36_20910 | Not Available | Negative | 4906798 - 4907496 | 26811.6 |
| sensor histidine kinase | DWZ36_20915 | Not Available | Negative | 4907498 - 4909066 | 59676.4 |
| elongation factor g | DWZ36_20920 | Not Available | Negative | 4909329 - 4911488 | 80535.6 |
| coproporphyrinogen iii oxidase family protein | DWZ36_20925 | Not Available | Positive | 4911673 - 4912803 | 43304.6 |
| hypothetical protein | DWZ36_20930 | Not Available | Positive | 4912941 - 4913132 | 7368.51 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

