Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5'-methylthioadenosine/adenosylhomocysteine nucleosidase | DWZ36_02005 | Not Available | Negative | 538025 - 538720 | 25510.5 |
| hypothetical protein | DWZ36_02010 | Not Available | Positive | 538805 - 541297 | 93092.5 |
| glycosyltransferase | DWZ36_02015 | Not Available | Negative | 541323 - 542069 | 28692.4 |
| glycosyltransferase | DWZ36_02020 | Not Available | Negative | 542062 - 543324 | 47669.5 |
| glycosyltransferase | DWZ36_02025 | Not Available | Negative | 543337 - 544452 | 42910.4 |
| hemolysin activation protein | DWZ36_02030 | Not Available | Negative | 544425 - 545441 | 40411.5 |
| licd family protein | DWZ36_02035 | Not Available | Negative | 545455 - 546252 | 31828.6 |
| nad/nadp octopine/nopaline dehydrogenase | DWZ36_02040 | Not Available | Negative | 546256 - 547356 | 41193.9 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DWZ36_02045 | Not Available | Negative | 547353 - 549158 | 70241.3 |
| glycosyl transferase | DWZ36_02050 | Not Available | Positive | 549248 - 550078 | 31833.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

