Phocaeicola vulgatus strain AF31-3

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF31-3 is a Gram-positive, rod-shaped bacterium that is characterized by its single-cell arrangement and strict anaerobic metabolism. This microbe is host-associated, indicating that it is typically found in association with a specific host organism, although details about the precise host have not been provided. The anaerobic nature of P. vulgatus strain AF31-3 suggests that it thrives in environments devoid of oxygen, which is a common characteristic of many gut-associated bacteria. The rod shape of P. vulgatus strain AF31-3 may facilitate its colonization and persistence in anaerobic niches, such as the gastrointestinal tract of its host, where it can engage in complex interactions with the host's microbiota. This strain is likely involved in various metabolic processes that contribute to the overall health and stability of its microbiome environment. The significance of host-associated, anaerobic bacteria like P. vulgatus strain AF31-3 lies in their potential roles in fermentation and nutrient production, which can influence the host's digestion and immune response. Understanding the specific interactions of this strain with its host could shed light on its ecological role and contributions to the microbiome's functional diversity.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF31-3
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF31-3

Accession NumberQRQI00000000.1

Gene Summary

Adenine Count

1484022 bp

Thymine Count

1483399 bp

Guanine Count

1069820 bp

Cytosine Count

1074558 bp

Genome Length

5112322 bp

Protein-coding Genes

4162 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
transcription termination/antitermination factor nusgDWZ36_00155Not Available+24504 - 2504620140.3
Ncrna_class:rnase_p_rnaNot AvailableNot Available+25085 - 25454Not Available
50s ribosomal protein l11DWZ36_00160Not Available+25107 - 2555015797.5
50s ribosomal protein l1DWZ36_00165Not Available+25566 - 2626424935.6
50s ribosomal protein l10DWZ36_00170Not Available+26280 - 2679818678.8
50s ribosomal protein l7/l12DWZ36_00175Not Available+26845 - 2721912654.2
dna-directed rna polymerase subunit betaDWZ36_00180Not Available+27322 - 31134142493.0
16s ribosomal rnaNot AvailableNot Available+29233 - 30766Not Available
dna-directed rna polymerase subunit beta'DWZ36_00185Not Available+31173 - 35459158848.0
23s ribosomal rnaNot AvailableNot Available+31190 - 34033Not Available

Displaying genes 31 – 40 of 4234 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites