Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_20570 | Not Available | Positive | 4828283 - 4829779 | 56804.6 |
| low specificity l-threonine aldolase | DWZ36_20575 | Not Available | Negative | 4830075 - 4831091 | 37852.4 |
| tonb-dependent receptor | DWZ36_20580 | Not Available | Positive | 4831257 - 4834022 | 104422.0 |
| hypothetical protein | DWZ36_20585 | Not Available | Positive | 4834059 - 4835636 | 56741.7 |
| mannose-6-phosphate isomerase | DWZ36_20590 | Not Available | Positive | 4835750 - 4836721 | 36200.5 |
| lactonase family protein | DWZ36_20595 | Not Available | Negative | 4836813 - 4837979 | 42682.8 |
| Tmrna,resume consensus sequence (at 89): tttatctggcaacgaaaa | Not Available | Not Available | Positive | 4838120 - 4838514 | Not Available |
| alpha-l-fucosidase | DWZ36_20605 | Not Available | Negative | 4838695 - 4840020 | 50388.9 |
| gtp-binding protein | DWZ36_20610 | Not Available | Positive | 4840169 - 4841392 | 46537.8 |
| hypothetical protein | DWZ36_20620 | Not Available | Negative | 4843166 - 4843471 | 10915.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

