Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m23 family peptidase | DWZ36_20520 | Not Available | Positive | 4813646 - 4814269 | 22827.6 |
| hypothetical protein | DWZ36_20525 | Not Available | Positive | 4814273 - 4814464 | 6973.57 |
| porin family protein | DWZ36_20530 | Not Available | Positive | 4814669 - 4815205 | 19608.1 |
| port family protein | DWZ36_20535 | Not Available | Positive | 4815409 - 4816014 | 21310.4 |
| port family protein | DWZ36_20540 | Not Available | Positive | 4816161 - 4816832 | 24235.6 |
| phosphoribosylaminoimidazolecarboxamide formyltransferase | DWZ36_20545 | Not Available | Negative | 4816934 - 4818109 | 43948.3 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_20550 | Not Available | Negative | 4818631 - 4820106 | 54874.2 |
| tonb-dependent receptor | DWZ36_20555 | Not Available | Negative | 4820135 - 4823185 | 112618.0 |
| site-specific integrase | DWZ36_20560 | Not Available | Positive | 4823553 - 4824713 | 44972.8 |
| tonb-dependent receptor | DWZ36_20565 | Not Available | Positive | 4825358 - 4828270 | 107731.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

