Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleotidyl transferase abieii/abigii toxin family protein | DWZ36_20415 | Not Available | Negative | 4799637 - 4800653 | 38695.9 |
| hypothetical protein | DWZ36_20420 | Not Available | Negative | 4800663 - 4801364 | 26763.7 |
| hypothetical protein | DWZ36_20425 | Not Available | Positive | 4801831 - 4802028 | 7526.21 |
| hypothetical protein | DWZ36_20430 | Not Available | Negative | 4802066 - 4802266 | 7437.23 |
| hypothetical protein | DWZ36_20435 | Not Available | Negative | 4802301 - 4802711 | 15585.5 |
| crp/fnr family transcriptional regulator | DWZ36_20440 | Not Available | Negative | 4802866 - 4803492 | 24759.0 |
| hypothetical protein | DWZ36_20445 | Not Available | Negative | 4803502 - 4803732 | 9343.46 |
| hypothetical protein | DWZ36_20450 | Not Available | Negative | 4803720 - 4804028 | 12015.3 |
| site-specific integrase | DWZ36_20455 | Not Available | Positive | 4804144 - 4805379 | 47891.2 |
| rhum protein | DWZ36_20460 | Not Available | Positive | 4805391 - 4805753 | 13614.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

