Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | DWZ36_20310 | Not Available | Positive | 4770752 - 4772245 | 54449.7 |
| is110 family transposase | DWZ36_20315 | Not Available | Negative | 4772416 - 4773381 | 35654.6 |
| endo-1,4-beta-xylanase | DWZ36_20320 | Not Available | Positive | 4773594 - 4774715 | 42056.4 |
| alpha-n-arabinofuranosidase | DWZ36_20325 | Not Available | Positive | 4774728 - 4775699 | 36792.0 |
| glycoside hydrolase family 43 protein | DWZ36_20330 | Not Available | Positive | 4776049 - 4777785 | 64662.4 |
| tonb-dependent receptor | DWZ36_20335 | Not Available | Positive | 4777827 - 4780898 | 113144.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_20340 | Not Available | Positive | 4780913 - 4782847 | 71613.1 |
| hypothetical protein | DWZ36_20345 | Not Available | Positive | 4782852 - 4783066 | 8656.79 |
| hypothetical protein | DWZ36_20355 | Not Available | Positive | 4784387 - 4786000 | 60890.3 |
| hypothetical protein | DWZ36_20360 | Not Available | Negative | 4786128 - 4787441 | 47438.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

