Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mannose-6-phosphate isomerase | DWZ36_20105 | Not Available | Negative | 4729221 - 4730186 | 36620.4 |
| dtdp-glucose 4,6-dehydratase | DWZ36_20110 | Not Available | Negative | 4730298 - 4731434 | 43641.4 |
| dtdp-4-dehydrorhamnose reductase | DWZ36_20115 | Not Available | Negative | 4731454 - 4732368 | 33866.3 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | DWZ36_20120 | Not Available | Negative | 4732473 - 4733030 | 21276.3 |
| glucose-1-phosphate thymidylyltransferase | DWZ36_20125 | Not Available | Negative | 4733107 - 4734015 | 33554.6 |
| exopolysaccharide biosynthesis protein | DWZ36_20130 | Not Available | Negative | 4734023 - 4734508 | 18576.8 |
| polysaccharide biosynthesis protein | DWZ36_20135 | Not Available | Negative | 4734566 - 4735054 | 18797.2 |
| hypothetical protein | DWZ36_20140 | Not Available | Negative | 4735059 - 4736192 | 44881.0 |
| had-iiia family hydrolase | DWZ36_20145 | Not Available | Negative | 4736189 - 4737340 | 43324.2 |
| n-acetylneuraminate synthase | DWZ36_20150 | Not Available | Negative | 4737334 - 4738206 | 33260.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

