Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | DWZ36_20055 | Not Available | Positive | 4719979 - 4720863 | 34283.2 |
| duf4250 domain-containing protein | DWZ36_20060 | Not Available | Negative | 4720926 - 4721102 | 6921.42 |
| dead/deah box helicase | DWZ36_20065 | Not Available | Negative | 4721217 - 4723496 | 86454.2 |
| hypothetical protein | DWZ36_20070 | Not Available | Negative | 4723552 - 4724019 | 16988.2 |
| virulence protein e | DWZ36_20075 | Not Available | Positive | 4724205 - 4724774 | 21603.9 |
| duf3987 domain-containing protein | DWZ36_20080 | Not Available | Positive | 4724778 - 4726721 | 71616.3 |
| duf4248 domain-containing protein | DWZ36_20085 | Not Available | Positive | 4726739 - 4726963 | 8370.25 |
| dna-binding protein | DWZ36_20090 | Not Available | Positive | 4727246 - 4727785 | 19200.7 |
| n-acetylmuramoyl-l-alanine amidase | DWZ36_20095 | Not Available | Positive | 4728096 - 4728614 | 19703.7 |
| hypothetical protein | DWZ36_20100 | Not Available | Negative | 4728870 - 4729071 | 7759.18 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

