Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-l-fucosidase | DWZ36_20005 | Not Available | Negative | 4705808 - 4707199 | 53594.9 |
| hypothetical protein | DWZ36_20010 | Not Available | Negative | 4707413 - 4707913 | 19223.5 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWZ36_20015 | Not Available | Negative | 4708181 - 4710121 | 72026.3 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_20020 | Not Available | Negative | 4710143 - 4713232 | 113763.0 |
| hotdog fold thioesterase | DWZ36_20025 | Not Available | Positive | 4713441 - 4713848 | 14518.5 |
| isochorismate synthase | DWZ36_20030 | Not Available | Positive | 4713845 - 4714987 | 43185.4 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | DWZ36_20035 | Not Available | Positive | 4715014 - 4716687 | 62956.0 |
| 1,4-dihydroxy-2-naphthoyl-coa synthase | DWZ36_20040 | Not Available | Positive | 4716687 - 4717508 | 30387.5 |
| o-succinylbenzoate synthase | DWZ36_20045 | Not Available | Positive | 4717586 - 4718641 | 39848.0 |
| o-succinylbenzoic acid--coa ligase | DWZ36_20050 | Not Available | Positive | 4718638 - 4719723 | 40554.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

