Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_19950 | Not Available | Positive | 4691122 - 4691916 | 30409.9 |
| duf1565 domain-containing protein | DWZ36_19960 | Not Available | Positive | 4692741 - 4694243 | 55394.6 |
| hypothetical protein | DWZ36_19965 | Not Available | Positive | 4694240 - 4694908 | 24733.0 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_19970 | Not Available | Positive | 4696062 - 4696474 | 14847.9 |
| acetylornithine carbamoyltransferase | DWZ36_19975 | Not Available | Negative | 4696627 - 4697592 | 36461.8 |
| gamma-glutamyl-phosphate reductase | DWZ36_19980 | Not Available | Negative | 4697612 - 4698865 | 45494.7 |
| glutamate 5-kinase | DWZ36_19985 | Not Available | Negative | 4698903 - 4699985 | 39536.0 |
| cof-type had-iib family hydrolase | DWZ36_19990 | Not Available | Positive | 4700144 - 4700926 | 28795.5 |
| glycoside hydrolase family 92 protein | DWZ36_19995 | Not Available | Positive | 4701130 - 4703322 | 82062.1 |
| beta-glucosidase | DWZ36_20000 | Not Available | Negative | 4703445 - 4705754 | 83744.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

