Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amidohydrolase | DWZ36_19900 | Not Available | Negative | 4670576 - 4671337 | 28511.8 |
| tonb family protein | DWZ36_19905 | Not Available | Negative | 4671529 - 4672215 | 25600.7 |
| transcription-repair coupling factor | DWZ36_19910 | Not Available | Negative | 4672480 - 4675845 | 127092.0 |
| duf418 domain-containing protein | DWZ36_19915 | Not Available | Positive | 4675953 - 4677137 | 45032.6 |
| tetratricopeptide repeat protein | DWZ36_19920 | Not Available | Positive | 4677199 - 4679394 | 86640.1 |
| recombinase | DWZ36_19925 | Not Available | Negative | 4679775 - 4680956 | 45990.3 |
| tonb-dependent receptor | DWZ36_19930 | Not Available | Positive | 4681245 - 4684427 | 118488.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_19935 | Not Available | Positive | 4684446 - 4686422 | 74944.3 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_19940 | Not Available | Positive | 4686463 - 4689312 | 106713.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_19945 | Not Available | Positive | 4689341 - 4691038 | 64162.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

