Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| biopolymer transporter exbd | DWZ36_19850 | Not Available | Negative | 4659761 - 4660366 | 22743.7 |
| mota/tolq/exbb proton channel family protein | DWZ36_19855 | Not Available | Negative | 4660395 - 4661210 | 28918.5 |
| hypothetical protein | DWZ36_19860 | Not Available | Negative | 4661317 - 4661721 | 15275.8 |
| sodium-translocating pyrophosphatase | DWZ36_19865 | Not Available | Positive | 4661937 - 4663133 | 41549.9 |
| hypothetical protein | DWZ36_19870 | Not Available | Negative | 4663203 - 4664987 | 69303.9 |
| amino acid-binding protein | DWZ36_19875 | Not Available | Negative | 4665223 - 4665639 | 15370.7 |
| phenylacetate--coa ligase | DWZ36_19880 | Not Available | Negative | 4665653 - 4666954 | 48582.5 |
| pyridoxal phosphate-dependent aminotransferase | DWZ36_19885 | Not Available | Negative | 4667049 - 4668353 | 48672.3 |
| indolepyruvate oxidoreductase subunit beta | DWZ36_19890 | Not Available | Negative | 4668358 - 4668939 | 21245.8 |
| indolepyruvate ferredoxin oxidoreductase | DWZ36_19895 | Not Available | Negative | 4668936 - 4670552 | 58851.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

