Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWZ36_19750 | Not Available | Positive | 4634395 - 4636254 | 70276.5 |
| aaa family atpase | DWZ36_19755 | Not Available | Positive | 4636579 - 4637772 | 45798.3 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_19760 | Not Available | Positive | 4637965 - 4641375 | 124882.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWZ36_19765 | Not Available | Positive | 4641403 - 4643289 | 72167.2 |
| hypothetical protein | DWZ36_19770 | Not Available | Positive | 4643881 - 4644111 | 7725.12 |
| hypothetical protein | DWZ36_19775 | Not Available | Negative | 4644238 - 4644483 | 9041.7 |
| zeta toxin | DWZ36_19780 | Not Available | Negative | 4644473 - 4645048 | 21483.9 |
| duf4488 domain-containing protein | DWZ36_19785 | Not Available | Negative | 4645404 - 4645898 | 18600.8 |
| asparagine--trna ligase | DWZ36_19790 | Not Available | Negative | 4646061 - 4647464 | 53448.1 |
| pseudouridine synthase | DWZ36_19795 | Not Available | Negative | 4647487 - 4648950 | 56068.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

