Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4981 domain-containing protein | DWZ36_01905 | Not Available | Negative | 512047 - 515376 | 125991.0 |
| hu family dna-binding protein | DWZ36_01910 | Not Available | Negative | 515469 - 515741 | 9278.25 |
| rhomboid family intramembrane serine protease | DWZ36_01915 | Not Available | Positive | 515952 - 516629 | 25332.5 |
| rhomboid family intramembrane serine protease | DWZ36_01920 | Not Available | Positive | 516610 - 517503 | 33946.6 |
| endonuclease | DWZ36_01925 | Not Available | Positive | 517507 - 518586 | 40277.9 |
| m3 family peptidase | DWZ36_01930 | Not Available | Positive | 518613 - 520700 | 78974.4 |
| protein translocase subunit secdf | DWZ36_01935 | Not Available | Positive | 520879 - 523866 | 109234.0 |
| sugar kinase | DWZ36_01940 | Not Available | Negative | 524132 - 525196 | 38940.5 |
| nad-dependent epimerase/dehydratase family protein | DWZ36_01945 | Not Available | Negative | 525339 - 526292 | 35269.3 |
| glycine c-acetyltransferase | DWZ36_01950 | Not Available | Positive | 526463 - 527653 | 43568.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

