Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prephenate dehydrogenase/arogenate dehydrogenase family protein | DWZ36_19645 | Not Available | Negative | 4607663 - 4608436 | 29390.4 |
| 3-deoxy-7-phosphoheptulonate synthase | DWZ36_19650 | Not Available | Negative | 4608441 - 4609508 | 39929.6 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DWZ36_19655 | Not Available | Negative | 4609528 - 4610712 | 45068.2 |
| prephenate dehydratase | DWZ36_19660 | Not Available | Negative | 4610687 - 4611529 | 31728.1 |
| transcriptional regulator | DWZ36_19665 | Not Available | Negative | 4611787 - 4612143 | 13354.3 |
| protease | DWZ36_19670 | Not Available | Positive | 4612333 - 4612863 | 18966.9 |
| pyridoxal phosphate-dependent aminotransferase | DWZ36_19675 | Not Available | Positive | 4612932 - 4614107 | 44770.1 |
| ai-2e family transporter | DWZ36_19680 | Not Available | Negative | 4614108 - 4615109 | 36967.9 |
| tetratricopeptide repeat protein | DWZ36_19685 | Not Available | Negative | 4615169 - 4616119 | 35751.7 |
| o-glcnacase | DWZ36_19690 | Not Available | Negative | 4616134 - 4618347 | 85039.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

