Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| v-type atp synthase subunit d | DWZ36_19590 | Not Available | Positive | 4593761 - 4594366 | 23447.8 |
| v-type atp synthase subunit i | DWZ36_19595 | Not Available | Positive | 4594363 - 4596168 | 67265.4 |
| v-type atp synthase subunit k | DWZ36_19600 | Not Available | Positive | 4596382 - 4596846 | 15421.2 |
| glycosyl transferase | DWZ36_19605 | Not Available | Positive | 4597102 - 4598772 | 63540.8 |
| alpha-glucan family phosphorylase | DWZ36_19610 | Not Available | Positive | 4598801 - 4601365 | 98180.8 |
| ahpc/tsa family protein | DWZ36_19615 | Not Available | Negative | 4601592 - 4602683 | 40190.0 |
| polyamine abc transporter atp-binding protein | DWZ36_19625 | Not Available | Positive | 4603212 - 4604600 | 51886.3 |
| abc transporter permease | DWZ36_19630 | Not Available | Positive | 4604637 - 4605410 | 28468.5 |
| abc transporter permease | DWZ36_19635 | Not Available | Positive | 4605404 - 4606195 | 28734.3 |
| extracellular solute-binding protein | DWZ36_19640 | Not Available | Positive | 4606199 - 4607533 | 51374.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

