Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldose 1-epimerase family protein | DWZ36_19330 | Not Available | Positive | 4540543 - 4541418 | 33987.7 |
| eama family transporter | DWZ36_19335 | Not Available | Negative | 4541467 - 4542387 | 34775.9 |
| phospho-sugar mutase | DWZ36_19340 | Not Available | Negative | 4542570 - 4544315 | 64726.5 |
| dipeptidase | DWZ36_19345 | Not Available | Negative | 4544629 - 4546269 | 61160.6 |
| m23 family peptidase | DWZ36_19350 | Not Available | Negative | 4546312 - 4547982 | 62671.9 |
| alanine dehydrogenase | DWZ36_19355 | Not Available | Positive | 4548176 - 4549267 | 38984.7 |
| acyloxyacyl hydrolase | DWZ36_19365 | Not Available | Negative | 4550175 - 4551485 | 49690.4 |
| nad kinase | DWZ36_19370 | Not Available | Negative | 4551657 - 4552529 | 32172.3 |
| pyridoxine 5'-phosphate synthase | DWZ36_19375 | Not Available | Positive | 4552648 - 4553364 | 26433.6 |
| mota/tolq/exbb proton channel family protein | DWZ36_19380 | Not Available | Positive | 4553364 - 4554077 | 25739.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

