Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_01855 | Not Available | Negative | 490499 - 492277 | 64403.9 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_01860 | Not Available | Negative | 492302 - 494053 | 66225.7 |
| tonb-dependent receptor | DWZ36_01865 | Not Available | Negative | 494073 - 497282 | 118956.0 |
| glycoside hydrolase family 97 protein | DWZ36_01870 | Not Available | Negative | 497722 - 499650 | 72937.5 |
| response regulator | DWZ36_01875 | Not Available | Negative | 499783 - 504009 | 161175.0 |
| arabinan endo-1,5-alpha-l-arabinosidase | DWZ36_01880 | Not Available | Positive | 504297 - 505832 | 57779.2 |
| alpha-l-arabinofuranosidase | DWZ36_01885 | Not Available | Positive | 505856 - 507835 | 75354.2 |
| arylsulfatase | DWZ36_01890 | Not Available | Negative | 508637 - 510199 | 57696.3 |
| trna 2-thiouridine(34) synthase mnma | DWZ36_01895 | Not Available | Negative | 510347 - 511402 | 40128.6 |
| dna-binding protein | DWZ36_01900 | Not Available | Negative | 511405 - 511875 | 18238.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

