Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific integrase | DWZ36_18955 | Not Available | Negative | 4448658 - 4449860 | 46782.8 |
| abc transporter atp-binding protein | DWZ36_18960 | Not Available | Negative | 4449944 - 4451809 | 72122.0 |
| duf3805 domain-containing protein | DWZ36_18965 | Not Available | Negative | 4451817 - 4452650 | 31676.3 |
| lactoylglutathione lyase | DWZ36_18970 | Not Available | Negative | 4452693 - 4453070 | 14724.3 |
| mbl fold metallo-hydrolase | DWZ36_18975 | Not Available | Negative | 4453088 - 4453879 | 30335.8 |
| hypothetical protein | DWZ36_18980 | Not Available | Negative | 4453889 - 4455079 | 45188.1 |
| rida family protein | DWZ36_18985 | Not Available | Negative | 4455242 - 4455619 | 13256.1 |
| transcription termination factor rho | DWZ36_18990 | Not Available | Positive | 4456047 - 4458056 | 74254.4 |
| right-handed parallel beta-helix repeat-containing protein | DWZ36_18995 | Not Available | Positive | 4458166 - 4460157 | 74709.5 |
| alpha-xylosidase | DWZ36_19000 | Not Available | Positive | 4460168 - 4462414 | 86401.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

