Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycerate kinase | DWZ36_18850 | Not Available | Positive | 4425524 - 4426663 | 39758.5 |
| bifunctional fucokinase/l-fucose-1-p-guanylyltransferase | DWZ36_18855 | Not Available | Negative | 4426650 - 4429490 | 105133.0 |
| nitroreductase family protein | DWZ36_18860 | Not Available | Negative | 4429564 - 4430169 | 23172.8 |
| signal peptide peptidase sppa | DWZ36_18865 | Not Available | Positive | 4430304 - 4432085 | 65880.9 |
| tetraacyldisaccharide 4'-kinase | DWZ36_18870 | Not Available | Positive | 4432093 - 4433193 | 42254.6 |
| purine-nucleoside phosphorylase | DWZ36_18875 | Not Available | Positive | 4433156 - 4433965 | 29954.3 |
| thiamine-phosphate kinase | DWZ36_18880 | Not Available | Positive | 4433970 - 4435010 | 38227.8 |
| Trna-phe | Not Available | Not Available | Positive | 4435128 - 4435200 | Not Available |
| site-specific integrase | DWZ36_18890 | Not Available | Positive | 4435335 - 4436534 | 46445.4 |
| hypothetical protein | DWZ36_18895 | Not Available | Positive | 4436611 - 4437606 | 39350.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

